PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi06g05400.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family bHLH
Protein Properties Length: 272aa    MW: 29816.3 Da    PI: 7.8074
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi06g05400.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.46.9e-10192234855
                      HHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   8 rErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      + ++RR+ri +++  L+el+P+       K++ +++LekA+ Y+k Lq
  Vradi06g05400.1 192 AAKNRRERISERLKILQELVPNG-----SKVDLVTMLEKAISYVKFLQ 234
                      569*******************5.....5******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.101.3E-12183242IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.281184233IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474599.81E-14184243IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.49E-11186238No hitNo description
SMARTSM003531.0E-11190239IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.0E-7194234IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    Send to blast
MALSLTSHGV SEYQKCGVEE EDGSQSTNGF SNDSASAITQ SLINFKADEF SSLMQGSESF  60
LSFQQSWMFS KESNLHEGCN QWNHVSPKNN TTDMRLVQNF SCSETATCYS SIITGAKDKK  120
QCESSSSGWL YSEPNVHSSS LNESAAQESV LRKRSFMGET MQAANNAKKP CTTASKATKP  180
KTSPSKDPQS VAAKNRRERI SERLKILQEL VPNGSKVDLV TMLEKAISYV KFLQLQVKVL  240
AADEFWPVQG GKAPDISQVR QAIDSILSSQ R*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150360.0AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014504323.10.0PREDICTED: putative transcription factor bHLH086
SwissprotQ9FJ002e-58BH086_ARATH; Putative transcription factor bHLH086
TrEMBLA0A0L9UW960.0A0A0L9UW96_PHAAN; Uncharacterized protein
TrEMBLA0A0S3RKV60.0A0A0S3RKV6_PHAAN; Uncharacterized protein
STRINGGLYMA14G07590.11e-161(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49373253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66470.13e-54ROOT HAIR DEFECTIVE6